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Category: DNA repair/ recombination
3.1.5. DNA repair/ recombination
3.1.5.1. Excision of prophages
Name | Function |
spoIVCA | excision of the skin element, creation of the sigK gene |
sprA | excision of the [SW|SP-beta prophage] |
sprB | excision of [SW|SP-beta prophage] |
Name | Function |
exoA | repair of oxidative DNA damage in spores |
nfo | repair of oxidative DNA damage in spores |
nth | DNA repair |
3.1.5.3. Spore-encoded non-homologous end joining system
Name | Function |
ligD | non-homologous end joining DNA repair, repair of gapped DNA substrates |
ykoV | non-homologous end joining DNA repair, repair of gapped DNA substrates |
3.1.5.4. Double strand breaks repair
Name | Function |
recU | [SW|DNA repair/ recombination] and [SW|chromosome segregation] |
ruvA | [SW|DNA repair/ recombination] |
ruvB | [SW|DNA repair/ recombination] |
3.1.5.5. Oxidized guanine (GO) DNA repair system
Name | Function |
adaA | adaptive response to alkylative DNA damage |
adaB | adaptive response to alkylative DNA damage |
addA | DNA repair/ recombination |
addB | DNA repair/ recombination |
alkA | adaptive response to alkylative DNA damage |
bstG | response to DNA damage |
dinG | response to DNA damage |
dprA | [category|SW 3.1.5|DNA repair/ recombination] |
exoR | removal of RNA from Okazaki fragments |
fin | control of [SW|sporulation] |
greA | transcription elongation |
helD | [SW|transcription], [SW|DNA repair/ recombination] |
hlpB | rescuing of [protein|49E8BFEC1CAB77DD91E0ED0791EBD480E4871239|AddA]-[protein|55A1EF8A10CB398CCD3FDD06D9483FE0DCE31C64|AddB]-mediated recombination intermediates |
lexA | regulation of DNA damage repair |
lrpC | DNA repair/ recombination |
mfd | promotes strand-specific DNA repair by displacing |
mrfA | mitomycin C-specific DNA damage repair |
mrfB | mitomycin C-specific DNA damage repair |
mutSB | DNA repair |
mutT | DNA repair, protection against oxidative stress |
ogt | DNA repair |
pcrA | coupling of DNA replication, transcription, recombination and segregation |
pnpA | DNA repair, competence development, RNA degradation |
polA | DNA replication |
polX | DNA repair |
polY1 | generation of mutations in stationary phase |
polY2 | UV-targeted mutagenesis |
radA | homologous recombination, control of c-di-AMP formation, co-ordination of responses to replicative stress and genetic recombination |
radC | DNA repair |
rarA | control of the access of the replication machinery to a collapsed replication fork |
recA | DNA repair/ recombination |
recF | [category|SW 3.1.5|DNA repair/ recombination] |
recG | DNA repair and chromosomal segregation |
recJ | replication fork maintenance |
recN | DNA repair and genetic recombination |
recO | DNA repair/ recombination |
recQ | replication fork maintenance |
recR | [category|SW 3.1.5|DNA repair/ recombination] |
recS | replication reactivation pathway |
recX | [SW|DNA repair/ recombination] |
sbcC | DNA inter-strand cross-link repair |
sbcD | unknown |
sbcE | DNA double-strand break repair and competence |
splA | regulation of the splA-splB operon |
splB | protection of spore DNA against photodamage |
ssbA | [category|SW 3.1.1|DNA replication], [category|SW 3.1.5|DNA repair/ recombination] |
ssbB | required for efficient genetic transformation |
ung | DNA repair |
uvrA | DNA repair after UV damage |
uvrB | DNA repair after UV damage |
uvrC | DNA repair after UV damage |
uvrX | DNA repair after UV damage |
yolD | unknown |
yqjX | unknown |
ywjD | protection of developing and dormant spores against UV DNA damage |
ywqL | DNA repair |
3.1.5.7. Mismatch repair (MMR)
Name | Function |
dnaN | [category|SW 3.1.1|DNA replication], DNA repair |
mutL | DNA repair |
mutS | DNA repair |
walJ | coordination of cell division with DNA replication |
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